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Sunday, October 13 | |
---|---|
7:00-8:00 | Meet & Greet in the bar 🎉
Everyone |
Monday, October 14 | |
9:00 | Welcome & Orientation Simon Prochnik, Sofia Robb, and TAs |
9:00-10:30 | Unix 1: Unix Overview, The Basics, Advanced Unix Unix cheet sheet Simon |
10:30-12:30 | Unix I problem set sequences.nt.fa file for Unix I, problem 6 cuffdiff.txt file for Unix I, problem 10 TAs |
12:30-2:00 | Lunch |
2:00-3:30 | Unix 2: Text Editors, Git for Beginners Sofia |
3:30-5:00 |
Unix II problem set TAs |
5:30-7:00 | Dinner |
7:00-8:00 | Meet the instructors, Review Session: Unix tips and tricks,
Coding best practices TAs |
8:00-10:00 | Problem Sets: Continue Unix TAs |
Tuesday, October 15 | |
9:00-10:30 | Python I: Overview, running python, syntax, data types and variables Simon |
10:30-12:30 | Python I problem set TAs |
12:30-2:00 | Lunch |
2:00-3:30 | Python II: Operators, truth, logic, numbers Sofia |
3:30-5:00 | Python II problem set TAs |
5:00-6:00 | Wine and Cheese 🍷 🧀 |
6:00-7:00 | Dinner |
7:00-8:00 | Review Session TAs |
8:00-10:00 | Problem Sets TAs |
Wednesday, October 16 | |
9:00-10:30 | Python III: Sequences, strings Simon |
10:30-12:30 | Python III Problem set TAs |
12:30-2:00 | Lunch |
2:00-3:30 | Python IV: Lists, tuples, loops Sofia |
3:30-5:00 | Python IV Problem set TAs |
5:00-6:00 | ☀ Go outside! Rest your eyeballs 👁👁, Run, Walk, Jog |
6:00-7:00 | Dinner |
7:00-8:00 | Review Session TAs |
8:00-10:00 | Problem Sets TAs |
Thursday, October 17 | |
9:00-10:30 | Python V: Dictionaries, sets Sofia |
10:30-12:30 | Python V problem set TAs |
12:30-2:00 | Lunch |
2:00-3:30 | Python VI: I/O and files Simon |
3:30-5:00 | Python VI problem set TAs |
5:00-6:00 | 🏃Run, Walk, Jog, Get Vitamin D and fresh air
TAs |
6:00-7:00 | Dinner |
7:00-8:00 | Review session!
TAs |
8:00-10:00 | Problem sets TAs |
Friday, October 18 | |
9:00-10:30 | Python VII: Regular expressions Sofia |
10:30-12:30 | Python VII problem set TAs |
12:30-2:00 | Lunch |
2:00-3:00 | Python VIII: Data structures Python IX: Exceptions Sofia |
3:00-5:00 | Python VIII Problem set Python IX Problem set TAs |
5:00-6:00 | 🏃 Run, Walk, Jog, Get Vitamin D and fresh air! 🏃
TAs |
6:00-7:00 | Dinner |
7:00-8:00 | Miniconda package manager Jessen |
8:00-10:00 | Problem sets TAs |
Saturday, October 19 | |
9:00-10:30 | Python X: Functions, Scope, and Modules Simon |
10:30-12:30 |
Python X Problem set
TAs |
12:30-2:00 | Lunch |
2:00-3:00 | Python XI: Python XI, classes BioPython: BioPython Sofia |
3:00-5:00 |
Python XI Problem Set
BioPython Problem Set TAs |
5:00-6:00 | 🏃 Run, Walk, Jog, Get Vitamin D and fresh air! 🏃
TAs |
6:00-7:00 | Dinner |
7:00-8:00 | Review TBD |
8:00-10:00 | Problem sets TAs |
Sunday, October 20 | |
9:00-10:30 | Bioinformatics 1, Python Pipelines:Bioinformatics tools Simon |
10:30-12:30 | Problem Sets TAs |
12:30-2:00 | Lunch |
2:00-3:00 | Coding with AI Simon |
3:00-5:00 | Problem Sets TAs |
5:00-7:00 | Dinner |
7:00-8:00 | Review TBD |
8:00-10:00 | Problem sets TAs |
Monday, October 21 | |
Free day | Relax, have some fun!! Everyone |
Tuesday, October 22 | |
9:00-10:30 | 🐛 Transcriptomes and RNAseq Part 1: Brian Haas |
10:30-12:30 | Workshop TAs |
12:30-2:00 | Lunch |
2:00-3:30 | 🦋 Transcriptomes and RNAseq Part2: Brian Haas |
3:30-5:00 | Workshop TAs |
5:00-7:00 | Dinner |
7:00 - 10:00 |
Simon |
Wednesday, October 23 | |
9:00-11:00 | Next Gen Sequencing technologies Anoja Perera |
11:00-12:30 | Next Gen Sequencing: File Types and Analysis Jessen Bredeson |
12:30-1:45 | Lunch |
1:00-3:30 | Genome Assembly lecture Deb Triant |
3:30-5:00 | Genome Assembly workshop TAs |
5:00-7:00 | Dinner |
1:00-3:30 | Genome Assembly lecture Deb Triant |
3:30-5:00 | Genome Assembly workshop TAs |
Thursday, October 24 | |
9:00-11:00 | Sequence Similarity Part 1 Bill Pearson |
11:00-12:30 | Gene homology workshop TAs |
12:30-1:30 | Lunch |
1:30-3:30 | Sequence Similarity Part2 Bill Pearson |
3:30-5:00 | Gene homology Workshop Pt 2 TAs |
1:30-5:00 | Sequence Similarity Part 2 Bill Pearson |
5:00-7:00 | Dinner |
7:00-8:30 | Open Source Software for Data Sharing Scott Cain |
8:30-10:00 | Problem Sets Student Collaboration night (TA night off): It is an excellent learning experience to help others find and fix bugs. Try explaining a concept. |
Friday, October 25 | |
9:00-11:00 | Image Processing
Jay Unruh |
11:00-12:30 | Image Processing Workshop TAs |
12:30-1:30 | Lunch |
1:30-5:00 | GO Terms and Phylogeny Paul Thomas |
5:00-7:00 | Dinner |
7:00 | Project Proposals
email to smr -at- stowers.org and prochnik -at- gmail.com |
Saturday, October 26 | |
8:30-9:00 | Project sign ups |
9:00 | Room Rerrangement TAs |
9:00-10:00 | First Project Group Meeting TAs |
10:00-12:30 | Group Projects Everyone |
12:30-2:00 | Lunch |
2:00-5:00 |
Group Projects Everyone |
5:00-7:00 | Dinner |
7:00-9:00 |
Group Projects Everyone |
Sunday, October 27 | |
9:00-12:30 | Group Projects Everyone |
12:30-2:00 | Lunch |
2:00-5:00 |
Group Projects Everyone |
Monday, October 28 | |
9:00-12:30 | Group Projects Everyone |
12:30-2:00 | Lunch |
3:30-5:30 | Project Presentations 20 min final presentations per group Everyone |
5:30-6:00 | Graduation Everyone |
6:00-6:45 | Cocktails in Bar |
6:45-9:00 | Course banquet |
9:00-????? | DJ and Dancing in Biondi 🕺 |
Tuesday, October 39 | |
after breakfast | Depart (we love you but go home) Everyone |
Participants | |||
---|---|---|---|
Instructor | Simon Prochnik | Serenity Comp Bio | prochnik - at - gmail.com |
Instructor | Sofia Robb | Stowers Institute for Medical Research | smr - at - stowers.org |
Teaching Assistant | Jessen Bredeson | DOE Joint Genome Institute | jessenbredeson - at - gmail.com |
Teaching Assistant | Ken Youens-Clark | University of Arizona | kyclark - at - arizona.edu |
Teaching Assistant | Eric Ross | Stowers Institute for Medical Research | ejr - at - stowers.org |
Teaching Assistant | Riley Kellermeyer | San Antonio Zoo | rileykellermeyer - at - gmail.com |
Teaching Assistant | Robert Dalipovic | Binghamton University | rdalipo1 - at - binghamton.edu |
Teaching Assistant | Maria (Majo) Blanco Salazar | Stowers Institute for Medical Research | MBlancoSalazar - at - stowers.org |
Lecturer | Brian Haas | Broad Institute | bhaas - at - broadinstitute.org |
Lecturer | Bill Pearson | University of Virginia | wrp - at - virginia.edu |
Lecturer | Deb Triant | University of Virginia | datriant - at - virginia.edu |
Lecturer | Jay Unruh | Stowers Institute for Medical Research | jru - at - stowers.org |
Lecturer | Anoja Pererar | Stowers Institute for Medical Research | agp - at - stowers.org |
Lecturer | Andrea Schorn | Cold Spring Harbor Laboratory | aschorn - at - cshl.edu |
Lecturer | Paul Thomas | University of Southern California | pdthomas - at - usc.edu |
Participant | Ankit Sharma | Brandeis University | ankitsharma - at - brandeis.edu |
Participant | Lola Takhirov | University of Southern California, Los Angeles | takhirov - at - usc.edu |
Participant | Harshad Ingle | Washington University in St. Louis | hingle - at - wustl.edu |
Participant | Chan Young Park | Chonnam National University Medical school | mose6606 - at - gmail.com |
Participant | Caitlin Millett | The Feinstein Institutes for Medical Research | cmillett - at - northwell.edu |
Participant | Henry Arnold | University of Utah | henry.arnold - at - hci.utah.edu |
Participant | Taylor Pio | Emory University | taylor.pio - at - emory.edu |
Participant | Rebekah Kim | Harvard University | rebekahkim - at - fas.harvard.edu |
Participant | Isobel Fetter | University of California, Santa Cruz | ifetter - at - ucsc.edu |
Participant | Rada Malko | Indiana University | rmalko - at - iu.edu |
Participant | Konstantin Queitsch | Oregon Health & Science | queitsch - at - ohsu.edu |
Participant | Timothy Schwanitz | Princeton University | ts5103 - at - princeton.edu |
Participant | Jorge Antonio Tzec Interian | Centro de Investigación CientÃficas de Yucatan | jorgetzec - at - gmail.com |
Participant | Upendra Chalise | University of Minnesota | uchalise - at - umn.edu |
Participant | Johanna Seitz-Holland | Brigham and Women's Hospital | jseitz - at - bwh.harvard.edu |
Participant | Nathan Harper | The Rockefeller University | nharper - at - rockefeller.edu |
Participant | Rajendra Pangeni | Nova Southeastern University | rpangeni - at - nova.edu |